How to import .txt file with missing data?Having problems with importing data in .dat formatList manipulation after importing txt-fileImport table from txt file with specific rowsRead data from file starting at a certain pointHow to import data from a .mat or a .txt file and manipulate dimensionsImport csv file which contains columns of different lengths --> How can I delete empty fields?Import a column of data, make a matrix from it and export it WITHOUT curly bracesHow can I import a huge CSV file quickly?How to separate rows with commas in imported CSVImporting .csv or .xlsx real data with some missing fields and procesing it for curve fitting and 3D plotting
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How to import .txt file with missing data?
Having problems with importing data in .dat formatList manipulation after importing txt-fileImport table from txt file with specific rowsRead data from file starting at a certain pointHow to import data from a .mat or a .txt file and manipulate dimensionsImport csv file which contains columns of different lengths --> How can I delete empty fields?Import a column of data, make a matrix from it and export it WITHOUT curly bracesHow can I import a huge CSV file quickly?How to separate rows with commas in imported CSVImporting .csv or .xlsx real data with some missing fields and procesing it for curve fitting and 3D plotting
$begingroup$
I have a .txt file that looks like this (direct copy from the file):
8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06
I'm interested in the 5th column, in which there are some missing data in some rows. When I just
Import["file.txt", "Table"]
MMA does not see the empty positions, so e.g. the first row has 7 elements, and the 5th becomes 5.4310e-06, which is not what I want.
How can I import the data with proper structure, and extract the desired column?
list-manipulation import data-structures
asked 9 hours ago
corey979corey979
21k64382
$endgroup$
add a comment |
$begingroup$
I have a .txt file that looks like this (direct copy from the file):
8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06
I'm interested in the 5th column, in which there are some missing data in some rows. When I just
Import["file.txt", "Table"]
MMA does not see the empty positions, so e.g. the first row has 7 elements, and the 5th becomes 5.4310e-06, which is not what I want.
How can I import the data with proper structure, and extract the desired column?
list-manipulation import data-structures
asked 9 hours ago
corey979corey979
21k64382
$endgroup$
add a comment |
$begingroup$
I have a .txt file that looks like this (direct copy from the file):
8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06
I'm interested in the 5th column, in which there are some missing data in some rows. When I just
Import["file.txt", "Table"]
MMA does not see the empty positions, so e.g. the first row has 7 elements, and the 5th becomes 5.4310e-06, which is not what I want.
How can I import the data with proper structure, and extract the desired column?
list-manipulation import data-structures
asked 9 hours ago
corey979corey979
21k64382
$endgroup$
I have a .txt file that looks like this (direct copy from the file):
8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06
I'm interested in the 5th column, in which there are some missing data in some rows. When I just
Import["file.txt", "Table"]
MMA does not see the empty positions, so e.g. the first row has 7 elements, and the 5th becomes 5.4310e-06, which is not what I want.
How can I import the data with proper structure, and extract the desired column?
list-manipulation import data-structures
list-manipulation import data-structures
asked 9 hours ago
corey979corey979
21k64382
asked 9 hours ago
corey979corey979
21k64382
edited 9 hours ago
corey979
asked 9 hours ago
corey979corey979
21k64382
asked 9 hours ago
corey979corey979
21k64382
asked 9 hours ago
corey979corey979
21k64382
21k64382
add a comment |
add a comment |
2 Answers
2
active
oldest
votes
$begingroup$
str = Import["file.txt", "Data"];
mat = StringSplit[
StringReplace[str, " " -> " ", "e" -> "*^"],
WhitespaceCharacter ..
] // ToExpression;
mat// MatrixForm
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
$endgroup$
$begingroup$
The"Data"import format is undocumented, not listed in$ImportFormats. The documented (and probably faster) way to do the same is to useReadList["test.txt", String].
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
add a comment |
$begingroup$
From your example it seems that the stringlength of a number can't be more than 10, so any number consists from 1 to 10 characters (digits, "e" character and the dot "."). Existing numbers can be separated by from one to 10 whitespaces on one line. And the last number can have no whitespace at the end. So we need to preprocess:
str="8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06";
lines=StringSplit[StringReplace[str,EndOfLine->" ","e"->"*^"],"rn"|"n"];
matrixOfStrings=StringCases[lines,Repeated[Except[" "],0,11]~~Repeated[" ",1,9]];
matrix=ToExpression[matrixOfStrings,InputForm];
%//TableForm
UPDATE
Another method which allows the columns to have arbitrary width:
str = ReadList["test.txt", String];
Transpose[
Transpose[
PadRight[Characters[str], Automatic, " "]] /. c : " " .. :> Table["t", Length[c]]
, "e" -> "*^"]
ToExpression@*StringJoin /@ DeleteCases[SplitBy[#, # === "t" &], "t" ..] & /@ %
MatrixForm@%
(output is the same)
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
$endgroup$
$begingroup$
And how to do it from a file? I.e., how toImport["file.txt"]to obtain yourstr?
$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Usestr=Import["file.txt","String"]. Note that on Windows in my code you may be should replace"n"with"rn".
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
add a comment |
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2 Answers
2
active
oldest
votes
2 Answers
2
active
oldest
votes
active
oldest
votes
active
oldest
votes
$begingroup$
str = Import["file.txt", "Data"];
mat = StringSplit[
StringReplace[str, " " -> " ", "e" -> "*^"],
WhitespaceCharacter ..
] // ToExpression;
mat// MatrixForm
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
$endgroup$
$begingroup$
The"Data"import format is undocumented, not listed in$ImportFormats. The documented (and probably faster) way to do the same is to useReadList["test.txt", String].
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
add a comment |
$begingroup$
str = Import["file.txt", "Data"];
mat = StringSplit[
StringReplace[str, " " -> " ", "e" -> "*^"],
WhitespaceCharacter ..
] // ToExpression;
mat// MatrixForm
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
$endgroup$
$begingroup$
The"Data"import format is undocumented, not listed in$ImportFormats. The documented (and probably faster) way to do the same is to useReadList["test.txt", String].
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
add a comment |
$begingroup$
str = Import["file.txt", "Data"];
mat = StringSplit[
StringReplace[str, " " -> " ", "e" -> "*^"],
WhitespaceCharacter ..
] // ToExpression;
mat// MatrixForm
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
$endgroup$
str = Import["file.txt", "Data"];
mat = StringSplit[
StringReplace[str, " " -> " ", "e" -> "*^"],
WhitespaceCharacter ..
] // ToExpression;
mat// MatrixForm
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
answered 8 hours ago
Anjan KumarAnjan Kumar
4,03311026
4,03311026
$begingroup$
The"Data"import format is undocumented, not listed in$ImportFormats. The documented (and probably faster) way to do the same is to useReadList["test.txt", String].
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
add a comment |
$begingroup$
The"Data"import format is undocumented, not listed in$ImportFormats. The documented (and probably faster) way to do the same is to useReadList["test.txt", String].
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
$begingroup$
The
"Data" import format is undocumented, not listed in $ImportFormats. The documented (and probably faster) way to do the same is to use ReadList["test.txt", String].$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
The
"Data" import format is undocumented, not listed in $ImportFormats. The documented (and probably faster) way to do the same is to use ReadList["test.txt", String].$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
$begingroup$
Interesting! Thanks for the information.
$endgroup$
– Anjan Kumar
7 hours ago
add a comment |
$begingroup$
From your example it seems that the stringlength of a number can't be more than 10, so any number consists from 1 to 10 characters (digits, "e" character and the dot "."). Existing numbers can be separated by from one to 10 whitespaces on one line. And the last number can have no whitespace at the end. So we need to preprocess:
str="8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06";
lines=StringSplit[StringReplace[str,EndOfLine->" ","e"->"*^"],"rn"|"n"];
matrixOfStrings=StringCases[lines,Repeated[Except[" "],0,11]~~Repeated[" ",1,9]];
matrix=ToExpression[matrixOfStrings,InputForm];
%//TableForm
UPDATE
Another method which allows the columns to have arbitrary width:
str = ReadList["test.txt", String];
Transpose[
Transpose[
PadRight[Characters[str], Automatic, " "]] /. c : " " .. :> Table["t", Length[c]]
, "e" -> "*^"]
ToExpression@*StringJoin /@ DeleteCases[SplitBy[#, # === "t" &], "t" ..] & /@ %
MatrixForm@%
(output is the same)
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
$endgroup$
$begingroup$
And how to do it from a file? I.e., how toImport["file.txt"]to obtain yourstr?
$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Usestr=Import["file.txt","String"]. Note that on Windows in my code you may be should replace"n"with"rn".
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
add a comment |
$begingroup$
From your example it seems that the stringlength of a number can't be more than 10, so any number consists from 1 to 10 characters (digits, "e" character and the dot "."). Existing numbers can be separated by from one to 10 whitespaces on one line. And the last number can have no whitespace at the end. So we need to preprocess:
str="8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06";
lines=StringSplit[StringReplace[str,EndOfLine->" ","e"->"*^"],"rn"|"n"];
matrixOfStrings=StringCases[lines,Repeated[Except[" "],0,11]~~Repeated[" ",1,9]];
matrix=ToExpression[matrixOfStrings,InputForm];
%//TableForm
UPDATE
Another method which allows the columns to have arbitrary width:
str = ReadList["test.txt", String];
Transpose[
Transpose[
PadRight[Characters[str], Automatic, " "]] /. c : " " .. :> Table["t", Length[c]]
, "e" -> "*^"]
ToExpression@*StringJoin /@ DeleteCases[SplitBy[#, # === "t" &], "t" ..] & /@ %
MatrixForm@%
(output is the same)
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
$endgroup$
$begingroup$
And how to do it from a file? I.e., how toImport["file.txt"]to obtain yourstr?
$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Usestr=Import["file.txt","String"]. Note that on Windows in my code you may be should replace"n"with"rn".
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
add a comment |
$begingroup$
From your example it seems that the stringlength of a number can't be more than 10, so any number consists from 1 to 10 characters (digits, "e" character and the dot "."). Existing numbers can be separated by from one to 10 whitespaces on one line. And the last number can have no whitespace at the end. So we need to preprocess:
str="8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06";
lines=StringSplit[StringReplace[str,EndOfLine->" ","e"->"*^"],"rn"|"n"];
matrixOfStrings=StringCases[lines,Repeated[Except[" "],0,11]~~Repeated[" ",1,9]];
matrix=ToExpression[matrixOfStrings,InputForm];
%//TableForm
UPDATE
Another method which allows the columns to have arbitrary width:
str = ReadList["test.txt", String];
Transpose[
Transpose[
PadRight[Characters[str], Automatic, " "]] /. c : " " .. :> Table["t", Length[c]]
, "e" -> "*^"]
ToExpression@*StringJoin /@ DeleteCases[SplitBy[#, # === "t" &], "t" ..] & /@ %
MatrixForm@%
(output is the same)
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
$endgroup$
From your example it seems that the stringlength of a number can't be more than 10, so any number consists from 1 to 10 characters (digits, "e" character and the dot "."). Existing numbers can be separated by from one to 10 whitespaces on one line. And the last number can have no whitespace at the end. So we need to preprocess:
str="8.1376 7.2490 6.4005 3.3893e-06 5.4310e-06 1.7980e-05 1.5303e-05
11.2834 10.1948 8.1657 32.256 68.032 3.2509e-06 3.9237e-06 8.0432e-06 5.3961e-06
1.5350 1.1260 0.8500 6.6665e-07 6.8028e-07 1.9302e-06 2.4867e-06
0.9850 0.6920 0.2360 0.192 0.768 3.3890e-09 9.8610e-09 4.6064e-08 1.3044e-07
1.5820 1.1040 0.9130 35.712 67.840 3.2341e-07 3.7886e-07 2.4787e-06 2.9939e-06";
lines=StringSplit[StringReplace[str,EndOfLine->" ","e"->"*^"],"rn"|"n"];
matrixOfStrings=StringCases[lines,Repeated[Except[" "],0,11]~~Repeated[" ",1,9]];
matrix=ToExpression[matrixOfStrings,InputForm];
%//TableForm
UPDATE
Another method which allows the columns to have arbitrary width:
str = ReadList["test.txt", String];
Transpose[
Transpose[
PadRight[Characters[str], Automatic, " "]] /. c : " " .. :> Table["t", Length[c]]
, "e" -> "*^"]
ToExpression@*StringJoin /@ DeleteCases[SplitBy[#, # === "t" &], "t" ..] & /@ %
MatrixForm@%
(output is the same)
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
edited 1 hour ago
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
answered 8 hours ago
Alexey PopkovAlexey Popkov
39k4109267
39k4109267
$begingroup$
And how to do it from a file? I.e., how toImport["file.txt"]to obtain yourstr?
$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Usestr=Import["file.txt","String"]. Note that on Windows in my code you may be should replace"n"with"rn".
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
add a comment |
$begingroup$
And how to do it from a file? I.e., how toImport["file.txt"]to obtain yourstr?
$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Usestr=Import["file.txt","String"]. Note that on Windows in my code you may be should replace"n"with"rn".
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
And how to do it from a file? I.e., how to
Import["file.txt"] to obtain your str?$endgroup$
– corey979
8 hours ago
$begingroup$
And how to do it from a file? I.e., how to
Import["file.txt"] to obtain your str?$endgroup$
– corey979
8 hours ago
$begingroup$
@corey Use
str=Import["file.txt","String"]. Note that on Windows in my code you may be should replace "n" with "rn".$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey Use
str=Import["file.txt","String"]. Note that on Windows in my code you may be should replace "n" with "rn".$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
$begingroup$
@corey979 I've updated the answer so it should work both under Windows and Linux.
$endgroup$
– Alexey Popkov
8 hours ago
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